species:   Rhsol
pid:       PID0503
parent:    Rhi-milR-176
paralog:   
locus:     KB317709.1:549448-549545
matures:   ['UUUGGAAUUGCUGGAUGUGGU', 'UGUCAUUCACGCAAUACAU']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317709.1:549448-549545

12 out of bounds
17 alignments
15 proper strand
15 stranded perfect matches

          ************************                            **************************          
UGCAAAAUAUAUUGUCAUUCACGCAAUACAUGUAGAUCAUAUGAUACAGAUUAACUAUGAAUAGCAUUUUGGAAUUGCUGGAUGUGGUGUAUCAGGUG
.((...((((((((.((((((.(((((.(((((...(((((((((....))))..)))))...)))...))..)))))))))))))))))))...)).
-------------------------------------------------------------------UUUGGAAUUGCUGGAUGUGGU---------- l=21 a=1 c
------------UGUCAUUCACGCAAUACAU------------------------------------------------------------------- l=19 a=0 c*
----------------------------------------------------------------CAUUUUGGAAUUGCUGGAUGUGGU---------- l=24 a=4 ma
------------UGUCAUUCACGCAAUACAUGUA---------------------------------------------------------------- l=22 a=0 ma*

-------------------------------------------------------------------UUUGGAAUUGCUGGAUGUGGU---------- l=21 a=1 (c)
------------------------------------------------------------------UUUUGGAAUUGCUGGAUGUGGU---------- l=22 a=1 
------------------------------------------------------------------UUUUGGAAUUGCUGGAUGUGGUG--------- l=23 a=2 
-----------------------------------------------------------------AUUUUGGAAUUGCUGGAUGUG------------ l=21 a=1 
-----------------------------------------------------------------AUUUUGGAAUUGCUGGAUGUGGU---------- l=23 a=2 
-----------------------------------------------------------------AUUUUGGAAUUGCUGGAUGUGGUG--------- l=24 a=1 
----------------------------------------------------------------CAUUUUGGAAUUGCUGGAUGUGGU---------- l=24 a=4 (ma)
----------------------------------------------------------------CAUUUUGGAAUUGCUGGAUGUGGUG--------- l=25 a=1 
---------------CAUUCACGCAAUACAUGUAGAUC------------------------------------------------------------ l=23 a=1 
UGCAAAAUAUAUUGUCAUUCACGC-------------------------------------------------------------------------- l=24 a=1 

mb-01011
ax-1011011
ku-01
ss-111111111100
fn-111
